PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG320300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 352aa    MW: 36358.8 Da    PI: 6.9986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG320300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14122168354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+ErrRR+riN  f++Lr+llP+      +K +Ka+ L ++ +++k+L
  Pavir.2NG320300.1.p 122 RSHSEAERRRRQRINGHFARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 168
                          78*************************9.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.882119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-14122171No hitNo description
PfamPF000107.8E-12122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15123175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14123175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-14125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.84E-5223273No hitNo description
Gene3DG3DSA:3.30.70.2609.0E-6223271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMWDGGVEHG SQEAAHQLLP WLGSAAFGEP AVAGFGAMGA AYGACDGVSV GGGLQGLGLA  60
HGGVFGFGFD AVQPPPQQRA AGGAAEGSGK AVVSGLLGSL QAELGRMTAR EMMDAKALAA  120
SRSHSEAERR RRQRINGHFA RLRSLLPNTT KTDKASLLAE VLDHVKELKR QTSAMMVAAA  180
AAVAGGGDDE GAAGPAQMLP TEADELAVDA AADRAGRLVV RASLCCEDRP DLIPDIVRAL  240
AALRMRARRA EITTLGGRVR SVLLITADEG AEDDDQGYDD DGGRCPNARQ RGGGGGHGRA  300
ASHRRHECIA SVQEALRGVM DRRTASSDTS SSGGGGIKRQ RMNYGVQEQC V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711890.0EU971189.1 Zea mays clone 359116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667787.11e-140PREDICTED: uncharacterized protein LOC100279487 isoform X1
TrEMBLA0A096T0511e-140A0A096T051_MAIZE; Uncharacterized protein
STRINGGRMZM2G176141_P011e-140(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-35bHLH family protein